Since you’ve moved the files while it was transcoding, you have to wait for the transcoder to complete its previous tasks before it will start transcoding the “new” (moved) files.
You can circumvent the wait time by going into the My Book Live’s dashboard > Settings > Remote Access > Advanced, and press the “Rebuild” button. This will wipe out all of the transcoded entries as well as the transcoding queue and start from the beginning.
